PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_115348g0020
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 189aa    MW: 20257.6 Da    PI: 5.3818
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_115348g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1796147256
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrd      k+ +r++lg+f ta+eAa a++ a+ +++g+
  MA_115348g0020  96 HYRGVRQRP-WGKFAAEIRD----SaKKgARVWLGTFNTAQEAAVAYDSAAYRIRGA 147
                     8********.**********....33334*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-3195154IPR001471AP2/ERF domain
CDDcd000183.50E-2995154No hitNo description
SMARTSM003805.4E-3596160IPR001471AP2/ERF domain
PfamPF008473.4E-1296146IPR001471AP2/ERF domain
PROSITE profilePS5103223.1396154IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2296155IPR016177DNA-binding domain
PRINTSPR003679.3E-1197108IPR001471AP2/ERF domain
PRINTSPR003679.3E-11120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDVAGSVNVD KNMLELIRHH LLEEEDEVGM IDIGGNLSPT AMGSCQNNSR GLTSEDNENG  60
CSSSACPVTG GAEAVNLQPL EPPPLEVKNK ESGGKHYRGV RQRPWGKFAA EIRDSAKKGA  120
RVWLGTFNTA QEAAVAYDSA AYRIRGAKAM LNFPLALSSS SENVPARGQM ERDKKRGREE  180
AVAVGESEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-3394159368ATERF1
3gcc_A6e-3394159368ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ404791e-33ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA9NMA33e-55A9NMA3_PICSI; Putative uncharacterized protein
STRINGGSMUA_Achr6P04440_0012e-34(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-34ethylene responsive element binding factor 5